Mouse hypothalamus — estrus versus diestrus
Mus musculus · Whole hypothalamus · bulk RNA-seq
Selected data and study scope
This dataset contains bulk RNA-seq data from Mus musculus, sampled from whole hypothalamus. The default comparison examines gene expression in Diestrus relative to Estrus.
The explorer includes 1 track and 1 comparison for this dataset.
The default track, Whole hypothalamus, includes 3 Estrus samples and 3 Diestrus samples in this comparison. These are analysis sample counts. Check the source for biological replication and pooling.
Interpretation and limitations
The measurement combines expression from the cells in the tissue sample. A difference in tissue expression alone does not identify which cell type contributes to it.
Expression values use log2(FPKM + 1). Keep this unit when exporting or comparing values. Values on other normalization scales are not directly interchangeable.
Evidence and verification
Pipeline QC passed. Mouse hypothalamus — estrus versus diestrus; all 1 registered contrasts on default track hypothalamus
Experimental design passed. Mouse hypothalamus — estrus versus diestrus; all 1 registered contrasts on default track hypothalamus
Author concordance not assessed. Author effect concordance has not been assessed
Pipeline QC can pass while experimental-design limitations remain. Read both assessments before interpreting results.
Open the dataset in the Explorer to read each check and its evidence. Author concordance compares effects for matched genes. It does not require identical author P values or FDR.
Read the analysis methods and interpretation guide and how to cite the source study and HypoExplorer. The source publication may include tissues, groups or comparisons beyond the data shown here.
Source study
Whole-hypothalamus RNA-seq from three 10-week-old female mice in estrus and three in diestrus. The other 14 tissues in the multi-tissue atlas are excluded; the official RSEM FPKM matrix is analyzed as documented log2(FPKM+1) without rounding (PMID 36589755; GSE131172)
Source publication
Zhou Y, Yan H, Liu W, Hu C, Zhou Y, Sun R, et al.
Frontiers in cell and developmental biology · 2022
Repository study title
Transcriptome profiling of wildtype C57BL/6 female mice during estrous cycle(mainly in estrus and diestrus).
The original study authors produced these data. HypoExplorer displays selected data and analyses that may cover only part of the study.
Comparisons in HypoExplorer
Diestrus vs Estrus · default
Positive differential-expression values indicate higher expression in the case group relative to the baseline. Check the comparison direction and study design when interpreting results.
Available tracks
| Track | Features | Estrus n | Diestrus n |
|---|---|---|---|
| Whole hypothalamus | 18,735 | 3 | 3 |
Expression and analysis results
Open this dataset to inspect gene expression and differential-expression results across the available tracks. Pathway enrichment is also available. The pathway databases differ by dataset.
HypoExplorer is in beta testing. Features and analyses may change during testing. Review the original source, analysis methods and quality-control checks before using a result in research.