Mouse GT1-7 hypothalamic neurons — MKRN3 overexpression (bulk RNA-seq)
Mus musculus · Whole hypothalamus · bulk RNA-seq
Selected data and study scope
This dataset contains bulk RNA-seq data from Mus musculus, sampled from whole hypothalamus. The default comparison examines gene expression in MKRN3 overexpression relative to Wild type.
The explorer includes 1 track and 1 comparison for this dataset.
The default track, GT1-7 hypothalamic neurons, includes 3 Wild type samples and 3 MKRN3 overexpression samples in this comparison. These are analysis sample counts. Check the source for biological replication and pooling.
Interpretation and limitations
These data come from a cell-culture model. Check the cell line or differentiation system and the conditions sampled before interpreting a result.
Expression values are CPM (TMM-normalized): counts per million on library sizes adjusted by the TMM factors of the study’s own edgeR fit. This scale adjusts for library size and composition, not gene length. Use it to inspect a feature across the samples in this analysis. CPM values are not absolute transcript counts.
Evidence and verification
Pipeline QC passed. Mouse GT1-7 hypothalamic neurons — MKRN3 overexpression (bulk RNA-seq); all 1 registered contrasts on default track gt17
Experimental design not assessed. Mouse GT1-7 hypothalamic neurons — MKRN3 overexpression (bulk RNA-seq); all 1 registered contrasts on default track gt17
Author concordance passed. Matched gene effects; mkrn3_overexpression_vs_wild_type. P values and FDR are contextual. Numerical acceptance: strong correlation and matched-gene direction.
Pipeline QC can pass while experimental-design limitations remain. Read both assessments before interpreting results.
Open the dataset in the Explorer to read each check and its evidence. Author concordance compares effects for matched genes. It does not require identical author P values or FDR.
Read the analysis methods and interpretation guide and how to cite the source study and HypoExplorer. The source publication may include tissues, groups or comparisons beyond the data shown here.
Source study
GT1-7 mouse hypothalamic neuronal cells, wild type vs MKRN3 overexpression, three RNA profiles per arm; independent culture preparations have not been established. This is an in-vitro model, not an in-vivo tissue estimate (PMID 33744966; GSE160467)
Source publication
Li C, Han T, Li Q, Zhang M, Guo R, Yang Y, et al.
Nucleic acids research · 2021
Repository study title
RNA Sequencing for MKRN3 regulating genes identification in GT1-7 cells
The original study authors produced these data. HypoExplorer displays selected data and analyses that may cover only part of the study.
Comparisons in HypoExplorer
MKRN3 overexpression vs Wild type · default
Positive differential-expression values indicate higher expression in the case group relative to the baseline. Check the comparison direction and study design when interpreting results.
Available tracks
| Track | Features | Wild type n | MKRN3 overexpression n |
|---|---|---|---|
| GT1-7 hypothalamic neurons | 6,259 | 3 | 3 |
Expression and analysis results
Open this dataset to inspect gene expression and differential-expression results across the available tracks. Pathway enrichment is also available. The pathway databases differ by dataset.
HypoExplorer is in beta testing. Features and analyses may change during testing. Review the original source, analysis methods and quality-control checks before using a result in research.